| Line | Branch | Exec | Source |
|---|---|---|---|
| 1 | module athena__avgpool3d_layer | ||
| 2 | !! Module containing implementation of a 3D average pooling layer | ||
| 3 | !! | ||
| 4 | !! This module implements 3D average pooling for downsampling volumetric data | ||
| 5 | !! by computing mean values within 3D pooling windows. | ||
| 6 | !! | ||
| 7 | !! Mathematical operation: | ||
| 8 | !! output[i,j,k,c] = (1/V) * sum_{l,m,n} input[i*s+l, j*s+m, k*s+n, c] | ||
| 9 | !! | ||
| 10 | !! where: | ||
| 11 | !! (i,j,k) are output spatial coordinates | ||
| 12 | !! c is the channel index | ||
| 13 | !! (l,m,n) iterate over the 3D pooling window | ||
| 14 | !! V = pool_size^3 is the window volume | ||
| 15 | !! s is stride in each dimension | ||
| 16 | !! | ||
| 17 | !! Smoother downsampling for volumetric/video data than max pooling. | ||
| 18 | !! Shape: (W,H,D,C) -> (W//stride,H//stride,D//stride,C) | ||
| 19 | use coreutils, only: real32, stop_program | ||
| 20 | use athena__base_layer, only: pool_layer_type, base_layer_type | ||
| 21 | use athena__pad3d_layer, only: pad3d_layer_type | ||
| 22 | use diffstruc, only: array_type | ||
| 23 | use athena__misc_types, only: & | ||
| 24 | onnx_node_type, onnx_initialiser_type, onnx_tensor_type | ||
| 25 | use athena__diffstruc_extd, only: avgpool3d | ||
| 26 | implicit none | ||
| 27 | |||
| 28 | |||
| 29 | private | ||
| 30 | |||
| 31 | public :: avgpool3d_layer_type | ||
| 32 | public :: read_avgpool3d_layer | ||
| 33 | |||
| 34 | |||
| 35 | type, extends(pool_layer_type) :: avgpool3d_layer_type | ||
| 36 | !! Type for 3D average pooling layer with overloaded procedures | ||
| 37 | contains | ||
| 38 | procedure, pass(this) :: set_hyperparams => set_hyperparams_avgpool3d | ||
| 39 | !! Set hyperparameters for 3D average pooling layer | ||
| 40 | procedure, pass(this) :: read => read_avgpool3d | ||
| 41 | !! Read 3D average pooling layer from file | ||
| 42 | |||
| 43 | procedure, pass(this) :: forward => forward_avgpool3d | ||
| 44 | !! Forward propagation derived type handler | ||
| 45 | |||
| 46 | end type avgpool3d_layer_type | ||
| 47 | |||
| 48 | interface avgpool3d_layer_type | ||
| 49 | !! Interface for setting up the 3D average pooling layer | ||
| 50 | module function layer_setup( input_shape, & | ||
| 51 | pool_size, stride, padding, verbose ) result(layer) | ||
| 52 | !! Set up the 3D average pooling layer | ||
| 53 | integer, dimension(:), optional, intent(in) :: input_shape | ||
| 54 | !! Input shape | ||
| 55 | integer, dimension(..), optional, intent(in) :: pool_size | ||
| 56 | !! Pool size | ||
| 57 | integer, dimension(..), optional, intent(in) :: stride | ||
| 58 | !! Stride | ||
| 59 | character(*), optional, intent(in) :: padding | ||
| 60 | !! Padding | ||
| 61 | integer, optional, intent(in) :: verbose | ||
| 62 | !! Verbosity level | ||
| 63 | type(avgpool3d_layer_type) :: layer | ||
| 64 | !! Instance of the 3D average pooling layer | ||
| 65 | end function layer_setup | ||
| 66 | end interface avgpool3d_layer_type | ||
| 67 | |||
| 68 | |||
| 69 | |||
| 70 | contains | ||
| 71 | |||
| 72 | !############################################################################### | ||
| 73 | 7 | module function layer_setup( & | |
| 74 |
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7 | input_shape, & |
| 75 | 7 | pool_size, stride, padding, verbose) result(layer) | |
| 76 | !! Set up the 3D average pooling layer | ||
| 77 | implicit none | ||
| 78 | |||
| 79 | ! Arguments | ||
| 80 | integer, dimension(:), optional, intent(in) :: input_shape | ||
| 81 | !! Input shape | ||
| 82 | integer, dimension(..), optional, intent(in) :: pool_size | ||
| 83 | !! Pool size | ||
| 84 | integer, dimension(..), optional, intent(in) :: stride | ||
| 85 | !! Stride | ||
| 86 | character(*), optional, intent(in) :: padding | ||
| 87 | !! Padding | ||
| 88 | integer, optional, intent(in) :: verbose | ||
| 89 | !! Verbosity level | ||
| 90 | |||
| 91 | type(avgpool3d_layer_type) :: layer | ||
| 92 | !! Instance of the 3D average pooling layer | ||
| 93 | |||
| 94 | ! Local variables | ||
| 95 | integer :: verbose_ = 0 | ||
| 96 | !! Verbosity level | ||
| 97 | integer, dimension(3) :: pool_size_, stride_ | ||
| 98 | !! Pool size and stride | ||
| 99 | character(len=20) :: padding_ | ||
| 100 | !! Padding | ||
| 101 | |||
| 102 |
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7 | if(present(verbose)) verbose_ = verbose |
| 103 | |||
| 104 | !--------------------------------------------------------------------------- | ||
| 105 | ! Set up pool size | ||
| 106 | !--------------------------------------------------------------------------- | ||
| 107 |
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7 | if(present(pool_size))then |
| 108 | 6 | select rank(pool_size) | |
| 109 | rank(0) | ||
| 110 |
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8 | pool_size_ = pool_size |
| 111 | rank(1) | ||
| 112 |
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4 | pool_size_(1) = pool_size(1) |
| 113 |
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8 | if(size(pool_size,dim=1).eq.1)then |
| 114 |
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3 | pool_size_(2:) = pool_size(1) |
| 115 |
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3 | elseif(size(pool_size,dim=1).eq.3)then |
| 116 |
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9 | pool_size_(2:) = pool_size(2:) |
| 117 | end if | ||
| 118 | end select | ||
| 119 | else | ||
| 120 |
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4 | pool_size_ = 2 |
| 121 | end if | ||
| 122 | |||
| 123 | |||
| 124 | !--------------------------------------------------------------------------- | ||
| 125 | ! Set up stride | ||
| 126 | !--------------------------------------------------------------------------- | ||
| 127 |
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7 | if(present(stride))then |
| 128 | 6 | select rank(stride) | |
| 129 | rank(0) | ||
| 130 |
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8 | stride_ = stride |
| 131 | rank(1) | ||
| 132 |
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4 | stride_(1) = stride(1) |
| 133 |
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8 | if(size(stride,dim=1).eq.1)then |
| 134 |
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3 | stride_(2:) = stride(1) |
| 135 |
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3 | elseif(size(stride,dim=1).eq.3)then |
| 136 |
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9 | stride_(2:) = stride(2:) |
| 137 | end if | ||
| 138 | end select | ||
| 139 | else | ||
| 140 |
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4 | stride_ = 2 |
| 141 | end if | ||
| 142 | |||
| 143 | |||
| 144 | !--------------------------------------------------------------------------- | ||
| 145 | ! Set up padding | ||
| 146 | !--------------------------------------------------------------------------- | ||
| 147 |
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7 | if(present(padding))then |
| 148 |
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2 | padding_ = padding |
| 149 | else | ||
| 150 | 5 | padding_ = "valid" | |
| 151 | end if | ||
| 152 | |||
| 153 | |||
| 154 | !--------------------------------------------------------------------------- | ||
| 155 | ! Set hyperparameters | ||
| 156 | !--------------------------------------------------------------------------- | ||
| 157 | call layer%set_hyperparams( & | ||
| 158 | pool_size=pool_size_, stride=stride_, & | ||
| 159 | padding=padding_, verbose=verbose_ & | ||
| 160 | 7 | ) | |
| 161 | |||
| 162 | |||
| 163 | !--------------------------------------------------------------------------- | ||
| 164 | ! Initialise layer shape | ||
| 165 | !--------------------------------------------------------------------------- | ||
| 166 |
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7 | if(present(input_shape)) call layer%init(input_shape=input_shape) |
| 167 | |||
| 168 |
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14 | end function layer_setup |
| 169 | !############################################################################### | ||
| 170 | |||
| 171 | |||
| 172 | !############################################################################### | ||
| 173 | 8 | subroutine set_hyperparams_avgpool3d( & | |
| 174 | this, pool_size, stride, padding, verbose & | ||
| 175 | ) | ||
| 176 | !! Set hyperparameters for 3D average pooling layer | ||
| 177 | use coreutils, only: to_lower | ||
| 178 | implicit none | ||
| 179 | |||
| 180 | ! Arguments | ||
| 181 | class(avgpool3d_layer_type), intent(inout) :: this | ||
| 182 | !! Instance of the 3D average pooling layer | ||
| 183 | integer, dimension(3), intent(in) :: pool_size | ||
| 184 | !! Pool size | ||
| 185 | integer, dimension(3), intent(in) :: stride | ||
| 186 | !! Stride | ||
| 187 | character(*), optional, intent(in) :: padding | ||
| 188 | !! Padding | ||
| 189 | integer, optional, intent(in) :: verbose | ||
| 190 | !! Verbosity level | ||
| 191 | |||
| 192 | ! Local variables | ||
| 193 | character(len=20) :: padding_ | ||
| 194 | |||
| 195 |
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8 | this%name = "avgpool3d" |
| 196 | 8 | this%type = "pool" | |
| 197 | 8 | this%subtype = "avg" | |
| 198 | 8 | this%input_rank = 4 | |
| 199 | 8 | this%output_rank = 4 | |
| 200 |
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8 | if(allocated(this%pool)) deallocate(this%pool) |
| 201 |
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8 | if(allocated(this%strd)) deallocate(this%strd) |
| 202 | allocate( & | ||
| 203 | ✗ | this%pool(this%input_rank-1), & | |
| 204 | ✗ | this%strd(this%input_rank-1) & | |
| 205 |
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8 | ) |
| 206 |
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40 | this%pool = pool_size |
| 207 |
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40 | this%strd = stride |
| 208 | |||
| 209 | ! Handle padding | ||
| 210 |
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8 | if(present(padding))then |
| 211 |
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7 | padding_ = trim(adjustl(padding)) |
| 212 | else | ||
| 213 | 1 | padding_ = "valid" | |
| 214 | end if | ||
| 215 | |||
| 216 | 23 | select case(trim(adjustl(to_lower(padding_)))) | |
| 217 | case("valid", "none", "") | ||
| 218 | case default | ||
| 219 | this%pad_layer = pad3d_layer_type( & | ||
| 220 | 4 | padding = [ (this%pool-1)/2 ], & | |
| 221 | method = padding_ & | ||
| 222 |
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|
34 | ) |
| 223 | end select | ||
| 224 | |||
| 225 |
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8 | end subroutine set_hyperparams_avgpool3d |
| 226 | !############################################################################### | ||
| 227 | |||
| 228 | |||
| 229 | !##############################################################################! | ||
| 230 | ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! | ||
| 231 | !##############################################################################! | ||
| 232 | |||
| 233 | |||
| 234 | !############################################################################### | ||
| 235 | 1 | subroutine read_avgpool3d(this, unit, verbose) | |
| 236 | !! Read 3D average pooling layer from file | ||
| 237 | use athena__tools_infile, only: assign_val, assign_vec | ||
| 238 | use coreutils, only: to_lower, to_upper, icount | ||
| 239 | implicit none | ||
| 240 | |||
| 241 | ! Arguments | ||
| 242 | class(avgpool3d_layer_type), intent(inout) :: this | ||
| 243 | !! Instance of the 3D average pooling layer | ||
| 244 | integer, intent(in) :: unit | ||
| 245 | !! File unit | ||
| 246 | integer, optional, intent(in) :: verbose | ||
| 247 | !! Verbosity level | ||
| 248 | |||
| 249 | ! Local variables | ||
| 250 | integer :: verbose_ = 0 | ||
| 251 | !! Verbosity level | ||
| 252 | integer :: stat | ||
| 253 | !! File status | ||
| 254 | integer :: itmp1 | ||
| 255 | !! Temporary integer | ||
| 256 | integer, dimension(3) :: pool_size, stride | ||
| 257 | !! Pool size and stride | ||
| 258 | integer, dimension(4) :: input_shape | ||
| 259 | !! Input shape | ||
| 260 | character(256) :: buffer, tag, err_msg | ||
| 261 | !! Buffer for reading lines, tag for identifying lines, error message | ||
| 262 | |||
| 263 | |||
| 264 | ! Initialise optional arguments | ||
| 265 | !--------------------------------------------------------------------------- | ||
| 266 |
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1 | if(present(verbose)) verbose_ = verbose |
| 267 | |||
| 268 | |||
| 269 | ! Loop over tags in layer card | ||
| 270 | !--------------------------------------------------------------------------- | ||
| 271 | 3 | tag_loop: do | |
| 272 | |||
| 273 | ! Check for end of file | ||
| 274 | !------------------------------------------------------------------------ | ||
| 275 | 4 | read(unit,'(A)',iostat=stat) buffer | |
| 276 |
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4 | if(stat.ne.0)then |
| 277 | call stop_program( & | ||
| 278 | "file encountered error (EoF?) before END AVGPOOL3D" & | ||
| 279 | ✗ | ) | |
| 280 | ✗ | return | |
| 281 | end if | ||
| 282 |
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4 | if(trim(adjustl(buffer)).eq."") cycle tag_loop |
| 283 | |||
| 284 | ! Check for end of layer card | ||
| 285 | !------------------------------------------------------------------------ | ||
| 286 |
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8 | if(trim(adjustl(buffer)).eq."END "//to_upper(trim(this%name)))then |
| 287 | 1 | backspace(unit) | |
| 288 | 4 | exit tag_loop | |
| 289 | end if | ||
| 290 | |||
| 291 |
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3 | tag=trim(adjustl(buffer)) |
| 292 |
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3 | if(scan(buffer,"=").ne.0) tag=trim(tag(:scan(tag,"=")-1)) |
| 293 | |||
| 294 | ! Read parameters from save file | ||
| 295 | !------------------------------------------------------------------------ | ||
| 296 | 6 | select case(trim(tag)) | |
| 297 | case("INPUT_SHAPE") | ||
| 298 | 1 | call assign_vec(buffer, input_shape, itmp1) | |
| 299 | case("POOL_SIZE") | ||
| 300 | 1 | call assign_vec(buffer, pool_size, itmp1) | |
| 301 | case("STRIDE") | ||
| 302 | 1 | call assign_vec(buffer, stride, itmp1) | |
| 303 | case default | ||
| 304 | ! Don't look for "e" due to scientific notation of numbers | ||
| 305 | ! ... i.e. exponent (E+00) | ||
| 306 | ✗ | if(scan(to_lower(trim(adjustl(buffer))),& | |
| 307 | 'abcdfghijklmnopqrstuvwxyz').eq.0)then | ||
| 308 | ✗ | cycle tag_loop | |
| 309 | ✗ | elseif(tag(:3).eq.'END')then | |
| 310 | ✗ | cycle tag_loop | |
| 311 | end if | ||
| 312 | write(err_msg,'("Unrecognised line in input file: ",A)') & | ||
| 313 | ✗ | trim(adjustl(buffer)) | |
| 314 | ✗ | call stop_program(err_msg) | |
| 315 |
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6 | return |
| 316 | end select | ||
| 317 | end do tag_loop | ||
| 318 | |||
| 319 | |||
| 320 | ! Set hyperparameters and initialise layer | ||
| 321 | !--------------------------------------------------------------------------- | ||
| 322 | 1 | call this%set_hyperparams(pool_size=pool_size, stride=stride) | |
| 323 | 1 | call this%init(input_shape = input_shape) | |
| 324 | |||
| 325 | |||
| 326 | ! Check for end of layer card | ||
| 327 | !--------------------------------------------------------------------------- | ||
| 328 | 1 | read(unit,'(A)') buffer | |
| 329 |
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2 | if(trim(adjustl(buffer)).ne."END "//to_upper(trim(this%name)))then |
| 330 | ✗ | write(0,*) trim(adjustl(buffer)) | |
| 331 | ✗ | write(err_msg,'("END ",A," not where expected")') to_upper(this%name) | |
| 332 | ✗ | call stop_program(err_msg) | |
| 333 | 1 | return | |
| 334 | end if | ||
| 335 | |||
| 336 | end subroutine read_avgpool3d | ||
| 337 | !############################################################################### | ||
| 338 | |||
| 339 | |||
| 340 | !############################################################################### | ||
| 341 | 1 | function read_avgpool3d_layer(unit, verbose) result(layer) | |
| 342 | !! Read 3D average pooling layer from file and return layer | ||
| 343 | implicit none | ||
| 344 | |||
| 345 | ! Arguments | ||
| 346 | integer, intent(in) :: unit | ||
| 347 | !! File unit | ||
| 348 | integer, optional, intent(in) :: verbose | ||
| 349 | !! Verbosity level | ||
| 350 | class(base_layer_type), allocatable :: layer | ||
| 351 | !! Instance of the 3D average pooling layer | ||
| 352 | |||
| 353 | ! Local variables | ||
| 354 | integer :: verbose_ = 0 | ||
| 355 | !! Verbosity level | ||
| 356 | |||
| 357 |
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1 | if(present(verbose)) verbose_ = verbose |
| 358 |
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|
2 | allocate(layer, source=avgpool3d_layer_type()) |
| 359 | 1 | call layer%read(unit, verbose=verbose_) | |
| 360 | |||
| 361 | 2 | end function read_avgpool3d_layer | |
| 362 | !############################################################################### | ||
| 363 | |||
| 364 | |||
| 365 | !############################################################################### | ||
| 366 | ✗ | subroutine build_from_onnx_avgpool3d( & | |
| 367 | ✗ | this, node, initialisers, value_info, verbose & | |
| 368 | ) | ||
| 369 | !! Read ONNX attributes for 3D average pooling layer | ||
| 370 | implicit none | ||
| 371 | |||
| 372 | ! Arguments | ||
| 373 | class(avgpool3d_layer_type), intent(inout) :: this | ||
| 374 | !! Instance of the 3D average pooling layer | ||
| 375 | type(onnx_node_type), intent(in) :: node | ||
| 376 | !! ONNX node information | ||
| 377 | type(onnx_initialiser_type), dimension(:), intent(in) :: initialisers | ||
| 378 | !! ONNX initialiser information | ||
| 379 | type(onnx_tensor_type), dimension(:), intent(in) :: value_info | ||
| 380 | !! ONNX value info | ||
| 381 | integer, intent(in) :: verbose | ||
| 382 | !! Verbosity level | ||
| 383 | |||
| 384 | ! Local variables | ||
| 385 | integer :: i | ||
| 386 | !! Loop index | ||
| 387 | integer, dimension(3) :: stride, pool_size, padding | ||
| 388 | !! Stride, kernel size, and padding | ||
| 389 | character(256) :: val | ||
| 390 | !! Attribute value | ||
| 391 | character(20) :: padding_method | ||
| 392 | !! Padding method | ||
| 393 | |||
| 394 | ! Set default values | ||
| 395 | ✗ | stride = 1 | |
| 396 | ✗ | pool_size = 2 | |
| 397 | ✗ | padding = 0 | |
| 398 | |||
| 399 | ✗ | do i = 1, size(node%attributes) | |
| 400 | ✗ | val = node%attributes(i)%val | |
| 401 | ✗ | select case(trim(adjustl(node%attributes(i)%name))) | |
| 402 | case("kernel_shape") | ||
| 403 | ✗ | read(val,*) pool_size | |
| 404 | case("strides") | ||
| 405 | ✗ | read(val,*) stride | |
| 406 | case("pads") | ||
| 407 | ✗ | read(val,*) padding | |
| 408 | case default | ||
| 409 | ! Do nothing | ||
| 410 | ✗ | write(0,*) "WARNING: Unrecognised attribute in ONNX AVGPOOL3D ", & | |
| 411 | ✗ | "layer: ", trim(adjustl(node%attributes(i)%name)) | |
| 412 | end select | ||
| 413 | end do | ||
| 414 | |||
| 415 | ! Check size of initialisers is zero | ||
| 416 | ✗ | if(size(initialisers).ne.0)then | |
| 417 | ✗ | write(0,*) "WARNING: initialisers not used for ONNX AVGPOOL3D layer" | |
| 418 | end if | ||
| 419 | |||
| 420 | ! Convert integer padding to character method | ||
| 421 | ✗ | if(any(padding.gt.0))then | |
| 422 | ✗ | padding_method = "constant" | |
| 423 | else | ||
| 424 | ✗ | padding_method = "valid" | |
| 425 | end if | ||
| 426 | |||
| 427 | call this%set_hyperparams( & | ||
| 428 | stride = stride, & | ||
| 429 | pool_size = pool_size, & | ||
| 430 | padding = padding_method & | ||
| 431 | ✗ | ) | |
| 432 | |||
| 433 | ✗ | end subroutine build_from_onnx_avgpool3d | |
| 434 | !############################################################################### | ||
| 435 | |||
| 436 | |||
| 437 | !##############################################################################! | ||
| 438 | ! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * ! | ||
| 439 | !##############################################################################! | ||
| 440 | |||
| 441 | |||
| 442 | !############################################################################### | ||
| 443 |
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2 | subroutine forward_avgpool3d(this, input) |
| 444 | !! Forward propagation | ||
| 445 | implicit none | ||
| 446 | |||
| 447 | ! Arguments | ||
| 448 | class(avgpool3d_layer_type), intent(inout) :: this | ||
| 449 | !! Instance of the 3D average pooling layer | ||
| 450 | class(array_type), dimension(:,:), intent(in) :: input | ||
| 451 | !! Input values | ||
| 452 | |||
| 453 | ! Local variables | ||
| 454 | type(array_type), pointer :: ptr | ||
| 455 | !! Pointer array | ||
| 456 | |||
| 457 | |||
| 458 |
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2 | call this%output(1,1)%zero_grad() |
| 459 | 2 | select case(allocated(this%pad_layer)) | |
| 460 | case(.true.) | ||
| 461 | ✗ | call this%pad_layer%forward(input) | |
| 462 | ✗ | ptr => avgpool3d(this%pad_layer%output(1,1), this%pool, this%strd) | |
| 463 | case default | ||
| 464 |
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2 | ptr => avgpool3d(input(1,1), this%pool, this%strd) |
| 465 | end select | ||
| 466 |
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2 | call this%output(1,1)%assign_and_deallocate_source(ptr) |
| 467 |
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2 | this%output(1,1)%is_temporary = .false. |
| 468 | |||
| 469 | 2 | end subroutine forward_avgpool3d | |
| 470 | !############################################################################### | ||
| 471 | |||
| 472 |
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56 | end module athena__avgpool3d_layer |
| 473 |